Pseudochloris sp. RCC4743
Access to genome browser and other tools for the genome - Pending
Resampling required
Sample collected
Sample acquired
Data generation
In assembly
Submitted
Insdc open
- Scientific name accepted: Pseudochloris
- Authority: B.Somogyi, T.Felföldi & L.Vörös, 2013
- Phylum: Chlorophyta
- Genus: Pseudochloris
- Ploidy: Unknown
PhyloPic color code:
Species match
Genus match
Family and above match
- Collect event: CC-Roscoff
- Coordinator(s): Katell Hervéou
- Operator(s): Nigel Grimsley
- Taxonomist(s): Nigel Grimsley
- Date: Dec. 11, 2006
- Site (sea): Mediterranean Sea
- Site (region): Lapalme lagoon
- Latitude: 42.97 / 42°58'12.0"N
- Longitude: 3.0 / 3°00'00.0"E
- ENA BioProject of the sequencing raw data: PRJEB115793
- ENA BioProject of the genome assembly: PRJEB115794
- Assembly accession: GCA_987342285
- EAR report with genome assembly metrics: pending
- Size: 12.67 Mbp
- GC content: 46.5%
- Number of chromosomes: 15
- Number of scaffolds: 15
- N50 of scaffolds: 938.98 Kbp
- L50 of scaffolds: 6
- Number of contigs: 28
- N50 of contigs: 631 Kbp
- L50 of contigs: 7
- Protein-coding genes: Undetermined
- Gene length (average): Undetermined
- Gene length (median): Undetermined
- CDS length (average): Undetermined
- CDS length (median): Undetermined
- CDS proportion (genome): Undetermined
- Genes without introns: Undetermined
- Number of contigs with at least one gene (genome): Undetermined
- Number of contigs with at least one gene (bases): Undetermined
BUSCO structural annotations completeness
BUSCO v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)v6.0.0 (euk_genome_min, miniprot), lineage: eukaryota_odb12 (genomes: 456, BUSCOs: 129)
Genome
- Single-copy genes: 85.3%
- Duplicated genes: 0.8%
- Fragmented genes: 4.7%
- Missing genes: 9.3%
Proteins
- Single-copy genes: Undetermined
- Duplicated genes: Undetermined
- Fragmented genes: Undetermined
- Missing genes: Undetermined